phylogeny
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7 weeks ago

Hi,

I have whole genome sequences of 30 E.coli isolates. I want to build phylogeny of these isolates based in their virulence genes.

Is it possible to do this or am i just imagining something absurd?

if it is possible, can someone guide me with the tools name and the pathway?

Thank you.

phylogeny genes with virulence • 268 views
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Why shouldn't this be possible?

Extract the sequences from the gene(s) of interest, and then infer the relationships from genetic variation. See e.g. tskit for comprehensive tutorials and tools.

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Thank you for your reply.

I was thinking about all the virulence genes in a scene, not individual. so I need to extract all the virulence genes sequences from all the isolates and build phylogeny? right?

Thank you

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