Compare 2 sets of genes
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7 weeks ago
chemokine-1 ▴ 10

I want to compare 2 sets of genes and see how each group affect the biological process/ molecular function inside a single cell independently. I have the Entrez ID & symbol of each gene. I'm a bit familiar with DAVID (Database for Annotation, Visualization, and Integrated Discovery) but I'm struggling to make a proper comparison and visualize the data. Would you all recommend on packaged on Python/R? or any other website to compare? (one set of genes increases Homologous recombination repair, and the second set decreases it).

genes python compare Repair R Recombination Homologous • 252 views
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if you want to run GO term enrichment analysis for each gene set, one of the options is clusterProfiler in R https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html

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