How can I customize `plotheatmap` of `deepTools` to different colors for different `.bed` file regions and how to customize the color of the intensity curve?

Question

[Dan]

Hello

How can I customize plotheatmap of deepTools to different colors for different .bed file regions and how to customize the color of the intensity curve?

I want to set the up panel as 'white,red' and the lower panel as 'white,blue'.

and change the color of the intensity curve to red and blue.

Thanks

Answer 1

[M.O.L.S]

Perhaps you could use matplotlib.pyplot in python to add a subplot. Inside the subplot you can change the label and colour to be blue instead of red. Instead of using plotheatmap there may be a way to incorporate matplotlib pyplot or seaborn with deepTools.