How can I customize plotheatmap of deepTools to different colors for different .bed file regions and how to customize the color of the intensity curve?
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Entering edit mode
8 weeks ago
Dan ▴ 60

Hello

How can I customize plotheatmap of deepTools to different colors for different .bed file regions and how to customize the color of the intensity curve?

I want to set the up panel as 'white,red' and the lower panel as 'white,blue'.

and change the color of the intensity curve to red and blue.

Thanks

deepTools plotheatmap • 432 views
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Entering edit mode
4 weeks ago
M.O.L.S ▴ 100

Perhaps you could use matplotlib.pyplot in python to add a subplot. Inside the subplot you can change the label and colour to be blue instead of red. Instead of using plotheatmap there may be a way to incorporate matplotlib pyplot or seaborn with deepTools.