How can I customize `plotheatmap` of `deepTools` to different colors for different `.bed` file regions and how to customize the color of the intensity curve?
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8 weeks ago
Dan ▴ 60

Hello

How can I customize plotheatmap of deepTools to different colors for different .bed file regions and how to customize the color of the intensity curve?

I want to set the up panel as 'white,red' and the lower panel as 'white,blue'. image

and change the color of the intensity curve to red and blue.

enter image description here

Thanks

deepTools plotheatmap • 432 views
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Entering edit mode
4 weeks ago
M.O.L.S ▴ 100

Perhaps you could use matplotlib.pyplot in python to add a subplot. Inside the subplot you can change the label and colour to be blue instead of red. Instead of using plotheatmap there may be a way to incorporate matplotlib pyplot or seaborn with deepTools.

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