Calling peaks with MACS following Bedtools
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5 months ago

I ran the following bedtools job commanding the following:

bedtools bamtobed -I bam_file.bam

Now, how do I get from this to calling peaks in MACS within Signac (I have generated a _summits.bed, peak_annotation.tsv, _peaks.xls, and .narrowPeak file). Please provide code as the tutorial is not clear enough for me.

scATAC-seq bedtools signac • 140 views
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