Entering edit mode
19 months ago
Gabriel
•
0
Hi,
I am using the command:
seqtk subseq Virsvall.fasta out.file.unmapped.lst > file.unmapped.fasta
And it's not working. The error is:
[E::stk_subseq] could not read the list of regions in the file 'out.file.unmapped.lst'.
The lst file looks like the following
How can I fix it?
Did you make the list file on a windows machine? Can you make sure the line endings are appropriate for unix by doing
dos2unix out.file.unmapped.lst
?Another option to try would be
filterbyname.sh
from BBMap suite.