Which RcisTarget databases to use in SCENIC
1
0
Entering edit mode
19 months ago
jomagrax ▴ 40

Im learning how to analyce single-cell data with SCENIC, following It's tutorial (http://htmlpreview.github.io/?https://github.com/aertslab/SCENIC/blob/master/inst/doc/SCENIC_Running.html).

They ask me te choose a RcisTarget database for Mouse, but even though I have found the database (https://resources.aertslab.org/cistarget/) I have no clue wich file to download depending on the reference genome used.

single-cell SCENIC R • 1.7k views
ADD COMMENT
1
Entering edit mode
19 months ago
junyazh ▴ 10

if you are running the R version SCENIC, the database must be the following two, as of today: mc_v10/mm9-500bp-upstream-7species.mc9nr.feather , mm9-tss-centered-10kb-7species.mc9nr.feather

ADD COMMENT

Login before adding your answer.

Traffic: 2106 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6