SRAdb vs SRAtools
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17 months ago
Aryan ▴ 30

How is SRAdb (an R package) different from SRA-toolkit (a command line interface) in terms of functionality?

For example, if I want to download all samples under some experiment, (say, all 404 samples for this experiment), can I use either tool?

R sra • 491 views
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Entering edit mode
17 months ago
GenoMax 141k

AFAIK due to enormous increase in size, SRAdb no longer provides access to current SRA data.

Your best bet is to use SRA-explorer to obtain fastq download URL's for the dataset you are looking for. Process of using the tool is described here: sra-explorer : find SRA and FastQ download URLs in a couple of clicks

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