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                    3.0 years ago
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    Hi! I'm new to creating phylogenetic trees. I currently have a VCF file from doing the variant calling. I'm now trying to make a phylogenetic tree and implement bootstrapping using RAxML. However, I noticed the input for RAxML needed is a Newick file (.nwk). How would I make a Newick file from my VCF file? Or how does the workflow generally go?
Multi-Sample Vcf To Phylogenetic Tree.