How to create Newick file from a VCF file or BAM files to input to RAxML?
0
0
Entering edit mode
18 months ago
Noé • 0

Hi! I'm new to creating phylogenetic trees. I currently have a VCF file from doing the variant calling. I'm now trying to make a phylogenetic tree and implement bootstrapping using RAxML. However, I noticed the input for RAxML needed is a Newick file (.nwk). How would I make a Newick file from my VCF file? Or how does the workflow generally go?

phylogram newick vcf population genetics • 999 views
ADD COMMENT
1
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 2183 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6