Cell Surface & Transmembrane Proteome Master List???

Question

[josh.faust]

Hi,

I am trying to filter some data based off the location of expression for different proteins. Basically, I only want to look at cell surface proteins and transmembrane proteins. I have found a master list with gene symbols and ENTREZ Ids for the cell surface markers but I wasn't sure if anyone knew of any master list for transmembrane proteins. Ideally this would come in the form of an .xlsx so I can import into R and filter based off it.

Thanks in advance :)

[qiz218591]

I think you would want to know about the transmembrane proteins then i would suggest you to go for the GO ontology base search or gene annotation in R itself with the codes of edgeR package and you will be able to get your query solved. Because in gene annotation section there is a section of the trans membrane proteins to look up on.

All the best Thank you

Answer 1

[LChart]

This is a very similar question to the recent question List of all genes that code for cell surface receptors

If you don't find what you need there, please update your question to specify what precisely you need

Note in particular the comment that mentions filtering UniProt on 'transmembrane' proteins.