How can I get sample sequence from bam file?
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7 weeks ago
ongchip • 0

screenshot of IGV

Hello. I produced BAM files and opened it with IGV. I can check SNPs, InDels of my samples compared with the reference genome. Then, how can I get the full sequences of my samples?

BAM • 204 views
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Entering edit mode
7 weeks ago
GenoMax 124k

Follow this tutorial to get a consensus: Generating consensus sequence from bam file

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