Hello, I'm having troubles with a vcf file. Since the sample names are sorted alphabetically in the vcf after Mutect2, I want to arrange the samples in order of my choice..
CHROM POS ID REF ALT QUAL FILTER INFO FORMAT [sample A] [sample B]
CHROM POS ID REF ALT QUAL FILTER INFO FORMAT [sample B] [sample A]
How can I change the order of the columns? Is it possible with gatk tool?