How to infer gene-level CNV status from ICGC data?
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9 weeks ago

I've downloaded copy number data from ICGC portal but I found it provided only the mutation type (copy neutral, copy neutral LOH, gain, loss) and segment mean (integer) for each segment but not the copy number alterations status (-2, -1, 0, 1, 2) for specific genes. I'm wondering how to estimate the gene-level copy number alteration status. enter image description here

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number CNV copy ICGC • 121 views
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