Reference mitochondrial DNA in GRCh37
1
1
Entering edit mode
18 months ago
paolo ▴ 70

I have a VCF file that uses assembly h19. How can I determine whether the reference sequence that has been used for the mitochondrial chromosome is YRI or rCRS?

GRCh37 rCRS YRI • 724 views
ADD COMMENT
1
Entering edit mode
18 months ago

Can you check the header of your VCF? Yoruba 16571bp, rCRS is 16569bp

ADD COMMENT
1
Entering edit mode

Thank you for the tip! It is the Yoruba.

ADD REPLY

Login before adding your answer.

Traffic: 1781 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6