How to change the number of seeds/predictions run by Alphafold

Question

[umjpyw]

Hi everyone,

I'm running alphafold 2, but I'm wanting the output to give me 100 predictions (and hence 100 structure I can put into PyMol) as opposed to the regular 5.

How do I change the code to do this please?

In alphafold2 I tried to do this in the 'Run Prediction' box and changing num_models=100 and

model_order=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100]

but this didn't work and still gave me the regular 5 model prediction files.

Any help for an alphafold newbie would be greatly appreciated! Thank you!

EDIT: This is on the google colab versions!