Entering edit mode
10 months ago
adarsh_pp
▴
30
Hello all,
Can anyone please suggest the best open source CNV calling tool that is available, having a decent specificty and sensitivity.
I am using cn.MOPS and ExomeDepth, currently.
But I want to improve the pipeline to get more accurate results.
Please suggest.
Thanks
You can search for "NGS CNV calling benchmarking" and check out the papers.
you need to specify somatic or germline