Seurat or Bioconductor for single cell RNA seq
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16 months ago
Sandra ▴ 10

Hi!

I am about to do single cell analysis and I am not sure which package is better Seurat or Bioconductor. I have been training on Bioconductor but most people around me uses Seurat.

Thanks!

single-cell bioconductor seurat RNAseq • 945 views
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16 months ago
Basti ★ 2.0k

Bioconductor is a package repository so your question is not accurate. Maybe you hesitate between Seurat and other packages dedicated to scRNA-seq analysis available in Bioconductor. If you have people around you that have experience in Seurat, it may be judicious to use Seurat so that you can ask them questions directly

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16 months ago
Lindsey ▴ 10

Seurat is an R package, so if you're used to work with other Bioconductor packages, you should be fine! Also the tutorials and manuals from the Seurat package are really good!

I hope this helps!

Lindsey

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