GATK gCNV contig ploidy priors table
0
1
Entering edit mode
14 months ago
adarsh_pp ▴ 40

Hello,

I am trying to run the gCNV tool from GATK and in that step for running the DetermineGermlineContigPloidy, it requires a contig ploidy priors table.

What is this table in simple terms?

How can I make this table?

Please help.

Thanks

NGS CNV GATK.gCNV Calling Variant • 670 views
ADD COMMENT
1
Entering edit mode

I believe the following thread will be useful, if anybody is searching for the same

https://gatk.broadinstitute.org/hc/en-us/community/posts/360074399831-What-is-contig-ploidy-priors-table-and-how-to-make-it-

ADD REPLY

Login before adding your answer.

Traffic: 3198 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6