Retrieve gene list output from gprofiler2 after over-representation analysis

Question

[Meisam]

Hi all

I'm doing a simple over-representation test for my DE gene list using the gprofiler2::gost() function. The output is a table with the pathways/gene-ontologies sorted with their respective p-values and some other statistics (standard output you can see from their package vignettes).

However I need to get the list of the subset of genes presented in each of the gene ontologies or pathways entries, the g:profiler website is able to provide such a list (under "Detailed Results" tab) but the package seems to lack such a feature, is there any way to get gene lists using the r package?

Answer 1

[ATpoint]

evcodes=TRUE