Hello, I have to remove unmapped reads and mapped incorrectly reads by using
samtools view. I have found in the internet and in samtools view manual, to do that I have to use options
-q. But I don't understand how people decide to use, for example,
-F 4 -q 10 or
-F 8 and so on. On what I have to base on, then I want to chose "power" of options?