Finding structural variant .vcf files for cancer cell lines
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12 months ago

Hi I'm working on fusion detection software, and I would like to add the option for the users to give a .vcf file containing the structural variants for the cell line of study so as to perform a prioritization of the calls. For creating this feature I need to find a vcf that contains variants for one of the following cell lines: BT-474, KPL-4, MCF-7, and SKBR3 which are my testing dataset.

Is there any database that contains structural variants from commonly used cell lines?

Thanks in advance.

cancer cell variants lines vcf structural • 363 views
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