Question

Reference genome to map embryonic mouse sequences

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2.5 years ago

shome ▴ 10

I have set of Bulk RNA seq data of embryonic mouse sequences.What reference genome I should use to map it ? Is it same as mm10 ?

genome RNA-seq mouse bulk • 703 views

ADD COMMENT • link updated 2.5 years ago by ATpoint 89k • written 2.5 years ago by shome ▴ 10

score 3 · Accepted Answer · 2023-04-17

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2.5 years ago

ATpoint 89k

Developmental stage does not alter the DNA sequence per se, so it is mm10 as for every other mouse experiment or the newer GRCm39, for example get it from GENCODE.

ADD COMMENT • link 2.5 years ago by ATpoint 89k