Question

How to get transcript coverage from Salmon output?

0

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2.5 years ago

unawaz ▴ 60

Hey!

I'm interested in getting the transcript coverage from Salmon quantification output. Is there a way to do this? Would RSeQC work?

salmon RNAseq RSeQC transcriptome • 915 views

ADD COMMENT • link updated 2.5 years ago by Istvan Albert 103k • written 2.5 years ago by unawaz ▴ 60

score 3 · Accepted Answer · 2023-04-19

3

Entering edit mode

2.5 years ago

Istvan Albert 103k

You would probably need to generate pseudo-bams and then process those with the transcript integrity programs.

ADD COMMENT • link 2.5 years ago by Istvan Albert 103k