Biopython error: "ModuleNotFoundError: No module named 'Bio.SubsMat'"
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Entering edit mode
12 months ago
Alexander ▴ 220

Making import I am getting such an error:

from Bio.SubsMat import MatrixInfo 

"ModuleNotFoundError: No module named 'Bio.SubsMat'"

Would you be so kind to suggest something ? Googling does not seem to lead to the same error.

PS

Some time ago it was working okay, see e.g. Kaggle notebook: https://www.kaggle.com/code/shtrausslearning/biopython-bioinformatics-basics?scriptVersionId=97875973&cellId=1

biopython • 2.9k views
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2
Entering edit mode
5 months ago
IkramInf ▴ 20
from Bio.Align import substitution_matrices

substitution_matrix = substitution_matrices.load('BLOSUM62')  # use matrix names to load
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