Seurat PlotClusterTree together with heatmap of gene expression
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9 months ago

Hi Everyone,

I am looking to plot a heatmap of gene expression together with hierarchical clustering of the samples. I can do each of them individually with DoHeatmap() and PlotClusterTree(), but I was hoping to find a way that combines them on the same plot. I was wondering if there is any tool that can help me do this? Thanks in advance!

seurat heatmap clustering single-cell • 855 views
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You can make a pseudo bulk matrix with AverageExpression() and then use pheatmap or ComplexHeatmap with cluster_cols and cluster_rows (pheatmap) set to TRUE

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