How to Remove Phasing Information from a VCF File?
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14 months ago

Can you just change pipe "|" to slash "/" in genotype GT field with e.g. bcftools annotate --set-format '%GT=[%TGT]\n'?

phasing • 1.0k views
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Entering edit mode
14 months ago
bcftools +setGT   in.vcf -- -t a -n u
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