Understanding the output from Eggnog mapper
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11 months ago
The ▴ 180

I'm new to Eggnog and trying to map the protein orthologs of Chinese hamster and Human, using the Eggnog mapper: http://eggnog-mapper.embl.de/

The params I used are as follows:

enter image description here and I'm getting the the following folder as output. Can somebody tell me which file has the most useful information of finding the pairwise orthologs ID wise? enter image description here It appears that I can only search against the Taxa "hominidae", but can I search only for Homo sapiens?

Secondly I'm also using the Inparanoid database for orthlog mapping as well using the following input, and i think I'm getting many more orthologs from Inparanoid compared to Eggnog, and any reason for this? enter image description here

inparanoid orthology eggnog • 531 views
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