Registration is now open for the course Multiplex imagine analysis
Dates: online, 6-9 November
During this course we will discuss basics and introduce state-of-the-art software-tools tailored for spatial omics and multiplexed image analysis. The most common workflows can be divided in three steps: (i) processing/preparing the images for cellular segmentation, (ii) extraction of the individual marker intensities for each cell which are subsequently used for cell phenotyping and (iii) neighborhood analysis to quantify interactions between the different cell types in the tissue. In this course we will visit each of these steps and present algorithms and software-tools used for processing, analysis and visualization of images and data. These tools include among others MCMICRO, SCIMAP, QuPath, Fiji and napari.
The course will be delivered in 4 days (see program below). Each day we will have a presentations as well as hands-on sessions.