After googling these questions for ages I have not found an answer so I assume it's extremely simple and I apologise in advance.
What do I do with biological replicates for RNA-seq? Do I just combine them? And how do I do what I need to do (which tools)?
I am completely new to RNA-seq analysis and I need to compare one condition to another. Specifically, I want to compare splicing in I have 2 developmental stages, 2 conditions and 3 replicates for each so I am very confused.
Thank you very much and apologies for the silly question.