can anyone help me with a step wise process for this, thank you
I have 30 MB of each five fasta files verticilium species genomes , actually I'm working on augustus for genome annotation of those species , for running annoation in augutus cgp( comparative gene prediction) i need a newick file of those 5 species.
You haven't said what type of tree you need (newick is not a type of tree, just a data representation/format).
You could try something like mashtree since your data is so large a sketch might be better/easier, though with only 5 genomes I'm not sure how good the tree will be.
I need a phylogenetic tree for those 5 genomes
Yes, I know - but that doesn't answer the question.
What kind of phylogenetic tree?
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