Label free quantification in Proteome discoverer software
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3 months ago
eqoa45 • 0

I have a table of proteome discoverer(PD) results from a label free shotgun assay. I used the Minora node, which I understand has the advantage of making the quantification label free. However, I have seen in other articles that these results are processed secondarily with other software to do the quantification. Is it not possible to work with the data obtained directly from the PD? I have the abundances ratios between samples. or do i need to do extra processing in order to get the differentially accumulated proteins? enter image description here

proteomics quantification spectrometry shotgun • 207 views

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