Estimating sample size from bulk RNAseq data
0
0
Entering edit mode
10 months ago
Researcher ▴ 20

Is it possible to estimate the sample size (number of cells) in a bulk RNASeq sample data?

rnaseq samplesize sequencing • 483 views
ADD COMMENT
1
Entering edit mode

You may find an estimation of cellular type composition, with deconvolution approaches. It's barely impossible to assess the absolute number of all the cells in your bulk.

ADD REPLY
0
Entering edit mode

Its hard to say how many cells was used in a Bulk RNA-SEQ, because we ignore the cells identity and extract RNA from whole cells.

Maybe you can try a control gene in the sample as housekeeping and count the number isoform/gene seen in the sample as the cell numbers, but its hard.

ADD REPLY

Login before adding your answer.

Traffic: 2407 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6