Looking to expand annotation of kegg in data frame R
0
1
Entering edit mode
10 months ago

I have a list of kegg orthologs with there annotations and I am looking to get the hierarchy of those, particularly the B, for my analysis.

A Metabolism
B   Carbohydrate Metabolism
C     00010 Glycolysis / Gluconeogenesis [PATH:ko00010]
D       K00844  HK; hexokinase [EC:2.7.1.1]
D       K12407  GCK; glucokinase [EC:2.7.1.2]
D       K00845  glk; glucokinase [EC:2.7.1.2]

What I have is a list of the following output: 00194 Photosynthesis proteins [BR:ko00194] and 00365 Furfural degradation [PATH:ko00365]

has anyone faced a similar situation?

kegg orthologs annotations R • 352 views
ADD COMMENT

Login before adding your answer.

Traffic: 1853 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6