Entering edit mode
9 months ago
josh.mannheimer
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0
Hi all,
I have several copy number segmentation files that have been aligned to CanFam4 (canine). I just need to match the chromosomal coordinates on the segmentation files with the corresponding gene annotations. I know there is software for humans that is capable of this but I have not found any dog. In the event that no software is available I am guessing I would have to match the coordinates to the gtf using a custom script, is there a straightforward was this can be done. Thanks
I am not familiar with using bed files but will look into this. Thank you for your suggestion.