I'm trying to visualize some cut&tag data, and would like to re-capitulate a plot that looks like this:
The key features I'm looking for are:
- The ability to vertically highlight regions [though I'm OK doing this in post, too]
- The presence of tracks without "boxes" around them -- including the gene track on the bottom
- The ability to show individual reads as "dots" or "dashes" (the "snow" effect)
The font for the track heights seem to suggest that this is IGV, but I haven't been able to customize it to do this (remove track boundaries, show reads as tiny dashes as opposed to the standard IGV read display). I'm open to some equivalent way of obtaining this display (in, say, WashU epigenome browser or UCSC genome browser).