Found some plasmids in my sequence. IS there any tool or process by which i can find whether there are any AMR genes within those sequence?
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10 months ago
Mustafa • 0

I've come across plasmids in my sequence and would like to determine if there are any antimicrobial resistance (AMR) genes present. Is there a specific tool or method available for this purpose?

WGS • 1.0k views
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Stop using bioinformatics as a tag. Every single post on this forum is related to bioinformatics.

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10 months ago
cfos4698 ★ 1.1k

There's another related pipeline/tool that simplifies the running of AMRFinder Plus and collates results nicely: https://github.com/MDU-PHL/abritamr (publication: https://www.nature.com/articles/s41467-022-35713-4)

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I downloaded it but what should i give in the command line?

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Read the manual.

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I am fairly new to this, could you give me a run down on how to do this?

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