Hi,

I am currently using the LncFinder-package in R to predict the secondary structure of RNA. I generated multiple dot-bracket-notations and I was wondering if there is a way to visualize all the structures I am generating.

Methods in R is preferable. I also don't mean a circle-Plot. i know how to do that. I am looking for a way to plot the structure directly in R or by integrating a different plot-software with R (python is also OK). I want to automate the process of plotting my data (multiple dot-notation files), instead of using the RNAFold Web visualizer or VARNA/jalview and importing each file one by one.

RStudio is an interface, the language is called R. If you use R and python solutions are available then use reticulate to call python from inside R, that works very well actually.

Maybe it is worth taking a look at this one?

https://cran.r-project.org/web/packages/RRNA/RRNA.pdf