tfea.chip mouse server

Question

[Franklin]

Has anyone used https://www.iib.uam.es/TFEA.ChIP/ for transcription factor binding analysis for RNA seq data from mice?

I am trying to use the server but every time I select the mouse option the server gets disconnected. It's been for 3 days now.

I am using this server for the first time so I am unsure how long it will go or how to contact for assistance.

Answer 1

[bk11]

I believe you can do this faster in R. TFEA.ChiP (TFEA.ChIP on Bioconductor (R v3.5)) is available on Bioconductor https://bioconductor.org/packages/release/bioc/vignettes/TFEA.ChIP/inst/doc/TFEA.ChIP.html