Help with scvi error

Question

[Chris]

Hi all,

I could not find this error after searching, would you please have a suggestion? I paste the line that show the error message to make the post not too long. I appreciate it!

sc.pp.neighbors(adata, use_rep = 'X_scVI')
sc.tl.umap(adata)
sc.tl.leiden(adata, resolution = 0.5)

RuntimeError                              Traceback (most recent call last)
Input In [19], in <cell line: 1>()
----> 1 sc.pp.neighbors(adata, use_rep = 'X_scVI')
      2 sc.tl.umap(adata)
      3 sc.tl.leiden(adata, resolution = 0.5)

RuntimeError: cannot cache function 'rdist': no locator available for file '/home/chris/.local/lib/python3.9/site-packages/umap/layouts.py'