Entering edit mode
11 weeks ago
Chris
▴
230
Hi all,
I would like to run leiden algorithm using seurat but got R crash when chosing algorithm = 4. Scanpy doesn't have this issue but for the consistency of the plots, I want to use seurat. I appreciate your help! I guest the size of data is too big (14.5GiB) which casue the issue.
seurat.combined <- FindClusters(seurat.combined, resolution = 0.1, algorithm = 4)
Warning: sparse->dense coercion: allocating vector of size 14.5 GiB.
NAs introduced by coercion to integer range.
Warning: NAs introduced by coercion to integer rangeWarning in paste(condition$message, collapse = "\n") :
