I am very new and I apologize if I ask very basic and stupid questions. I've been kind of thrown into doing transcriptomics and there isn't anyone in my lab who can teach/help me with this.
I have run through DESeq analysis (samples are Mus musculus) in R, and have the significant differentially expressed transcripts which I'd like to now run Gene Ontology for. But, I'm having trouble doing this using the transcripts. I see others using Ensemble_IDs or Entrez_IDs, but from my understanding those are not particular to the transcript?
Am I able to run moreso "Transcript Ontology"? I am attempting to implement this using the enrichGO function of ClusterProfiler.
Thank you so very much for any help!