Pangenome using Orthofinder

Question

[kirankumareripogu]

Hi,

I am working on bacterial genomics. I ran the OrthoFinder program with default parameters for >200 bacterial genomes. How can I use the results derived from OrthoFinder to perform the Pangenome analysis. I want to calculate the total genes, core genes, accessory genes and unique genes present in the genomes. Can someone suggest how to carry out this analysis?

[GenoMax]

Came across these: https://github.com/PlantDr430/FunFinder_Pangenome

https://github.com/neherlab/pan-genome-analysis/blob/master/advanced_options.md

[kirankumareripogu]

Thank you GenoMax for your reply and suggesting the links for the pangenome analysis.