I'm making alignments using Prank on a high-performance supercomputer. Since the supercomputer has a time limit, I'm wondering if Prank has any checkpoint and restore function that I am not aware of? Thanks.
Always link to the tool you're talking about, unless you're referring to something like samtools or GATK. Also specify the version you're using - your post has insufficient detail.
Are you talking about https://ariloytynoja.github.io/prank-msa/ ? If so, you may have better luck using an issue on their GitHub repo here: https://github.com/ariloytynoja/prank-msa
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