Hallo! I am still not grounded in this field and I have a deadline fast approaching with basically no how to proceed. I am working with nanopore data trying to identify the species of mosquitoes, their last blood meal and check if they have kdr resistance. I initially used kraken for the metagenomics classification using the whole genome sequences of the mosquitoes. However, my supervisor suggested I use a specific gene, which is the cox1 genes. I am getting confused on what to do. Truth is, I have not made much progress and I sincerely need someone probably proficient in this field.
I grasp things easily but I do need to what to do and why I am doing it.
Ofcourse I am willing to pay by the hour for the help.
I will appreciate a feedback.