Entering edit mode
5 months ago
tvibhaps
•
0
Hi,
I am in need of creating all_genotypes_by_snps.CHP.bin
and all_genotypes_by_snps.CHP.index.txt
files for snpchip samples using related APT tools.
I will use those files in creating genotype calling files as below, and eventually will create plink files from this generated base call file.
apt-format-result --batch-folder <folder location> <file> --annotation-file <file> --export-txt-file
Any help is appreciated.
Thank you.