Entering edit mode
10 months ago
Catalina
•
0
Hi,
I am getting error while running HTseq. This is the command and the error:
htseq-count -q -f bam -s yes Ac1_mapped/ac1_mappedAligned.bam /global/home/users/catalinacastro/star/genome/genomic_v2.gtf > count.txt
Error occurred when processing GFF file (line 637338 of file /global/home/users/catalinacastro/star/genome/genomic_v2.gtf):
not enough values to unpack (expected 9, got 1)
[Exception type: ValueError, raised in __init__.py:221]
Thanks, Catalina
Is that a blank line at end of your GTF file?