Extract variants from 100 000 genomes project

Question

[Mairena]

I am trying to extract variants from a list of genes in the 100 000 genomes project.

There are two options to do this :

https://re-docs.genomicsengland.co.uk/small_variant/

https://re-docs.genomicsengland.co.uk/aggv2_functional_annotation_queries/

The scripts are given on the websites but they throw errors, I cannot run them. Maybe someone could sit down with me via zoom and help. Happy to pay for your time.

[Pierre Lindenbaum]

"but they throw errors, I cannot run them."