error in plink
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Entering edit mode
3 months ago
Emilija • 0

Hey, I keep getting this error in plink Error: No valid entries in --score file.

I looked back at the file and everything looks okay, and there are SNPs in common of the summary statistics file and the other file.

This is my code, what do you think is happening and how can I fix it:

./plink --bfile Betula_all_200115 --score Il6_clumped_final_Emilija_22112023.txt --q-score-range PRS_P_ranges.txt il6_p.txt --out IL6_scores_Emilija_Betula_22112023

polygenicriskscore prscalculation prs plink error • 198 views
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Entering edit mode

I think might have to do something how your score file is formated. Here is a little bit on how PLINK handles those files: https://www.cog-genomics.org/plink/1.9/score

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