I'm a Bioinformatics newbie encountering an issue with STAR alignment. I downloaded the mm10 genome and indexed it with Bowtie 2. When attempting to run mapping with STAR, I received the following error message.
FATAL ERROR: could not open genome file /storage/data/SCA/Anojan/genomes/mm10/indexed_genomes//genomeParameters.txt
SOLUTION: check that the path to genome files, specified in --genomeDir is correct and the files are present, and have user read permsissions while running start after indexing"
But I couldn't find any
genomeParamters.txt files. I think they are specific to the STAR indexing.
How to fix it?